Regime shifts between oxic and anoxic states. a Cyanobacterial population density and, b oxygen concentration predicted at steady state, as function of the oxygen diffusivity. Blue lines indicate the oxic state and red lines the anoxic state. In a the blue and red arrows indicate the basins of attraction of the oxic and anoxic state, respectively, and the dashed orange line is the separatrix between these two basins of attraction. In b T 1 and T 2 indicate the two tipping points of the system and black arrows illustrate the hysteresis loop. Parameter values are given in Supplementary Table 1, with P b = 9.5 μM. The initial cyanobacterial density varies, while the other initial conditions are set at N PB = N SB = 1 × 108  cells L−1, S O = 250 μM, S R = 350 μM, O = 150 μM, P = 9.5 μM. Graphic: Bush, et al., 2017 / Nature Communications

6 October 2017 (UvA News) – Gradual environmental changes due to eutrophication and global warming can cause a rapid depletion of oxygen levels in lakes and coastal waters. A new study led by professors Jef Huisman and Gerard Muyzer of the University of Amsterdam (UvA) shows that microorganisms play a key role in these disastrous regime shifts. The researchers’ findings were published in the journal Nature Communications on 6 October 2017.

Regime shifts are abrupt, large and persistent changes in the structure and function of ecosystems triggered by gradual changes in environmental conditions. Regime shifts have been described for a large variety of ecosystems. One type of regime shift may occur in lakes and coastal waters when a rapid depletion of the dissolved oxygen concentration leads to a lack of oxygen, which is detrimental to most aquatic organisms. Although this phenomenon is well known, the underlying mechanisms causing the transition from oxic to anoxic conditions are not fully understood.

Shifts in microbial composition

Scientists from the UvA and the University of Edinburgh developed a mathematical model to investigate interactions between the microbial species composition and the dissolved oxygen concentration. They discovered that lakes can be in two alternative stable states: one in which the lake is rich in oxygen, and another in which it lacks oxygen. Transitions from the oxic to the anoxic state occur in the form of a regime shift. “When the oxygen influx is gradually reduced, at first oxygen-producing cyanobacteria and algae still persist and the lake remains in the oxic state”, explains first author Tim Bush. “Below a critical threshold, however, sulfate-reducing bacteria and photosynthetic sulfur bacteria take over. These cause an increase in sulfide concentrations, which then kills the cyanobacteria and rapidly flips the lake from an oxic to an anoxic state.”

Reversal to oxic conditions not easy

One of the implications of this regime shift is that a return to oxygen-rich conditions is not easy. The system displays hysteresis. Once the water has turned anoxic, high sulfide concentrations maintained by the anaerobic sulfur bacteria stabilize the anoxic conditions. As a result, returning to the former oxic conditions requires a much larger oxygen influx than the influx that originally brought the system into its anoxic state.

Lakes and seas

The researchers monitored a small lake with seasonal anoxia in the deeper water layers to investigate these model predictions. The lake displayed hysteresis in the transition between oxic and anoxic conditions, with changes in microbial community composition in agreement with the model predictions. Similar phenomena have been observed in eutrophied coastal waters, where anoxic conditions and high sulfide concentrations have led to mass mortalities of fish, molluscs, and many other species. The authors indicate that similar oxic-anoxic regime shifts have probably occurred at a global scale in the Earth’s geological past, when vast areas of the ocean became oxygen-depleted during periods of global warming and high atmospheric CO2 concentrations. According to professors Huisman and Muyzer, several aspects are still not fully understood or cannot be quantified in detail. However, these results provide a warning that continued eutrophication and warming of lakes and seas may push these ecosystems beyond a critical tipping point, causing rapid transitions from oxic to anoxic conditions that are not easily reversed.


This research was supported by the UvA’s Systems Biology research priority area, the European Research Council, the China Scholarship Council and the US Army Research Office.

Publication details

Timothy Bush, Muhe Diao, Rosalind J. Allen, Ruben Sinnige, Gerard Muyzer & Jef Huisman: ‘Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics’ in Nature Communications 8 (Article number: 789), 6 October 2017. DOI: 10.1038/s41467-017-00912-x.


UvA Persvoorlichting

Microbes dictate regime shifts causing anoxia in lakes and seas

ABSTRACT: Although regime shifts are known from various ecosystems, the involvement of microbial communities is poorly understood. Here we show that gradual environmental changes induced by, for example, eutrophication or global warming can induce major oxic-anoxic regime shifts. We first investigate a mathematical model describing interactions between microbial communities and biogeochemical oxidation-reduction reactions. In response to gradual changes in oxygen influx, this model abruptly transitions between an oxic state dominated by cyanobacteria and an anoxic state with sulfate-reducing bacteria and phototrophic sulfur bacteria. The model predictions are consistent with observations from a seasonally stratified lake, which shows hysteresis in the transition between oxic and anoxic states with similar changes in microbial community composition. Our results suggest that hysteresis loops and tipping points are a common feature of oxic-anoxic transitions, causing rapid drops in oxygen levels that are not easily reversed, at scales ranging from small ponds to global oceanic anoxic events.

Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics



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